Package: dartR.spatial 1.2.2

dartR.spatial: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data

Provides landscape genomic functions to analyse 'SNP' (single nuclear polymorphism) data, such as least cost path analysis and isolation by distance. Therefore each sample needs to have coordinate data attached (lat/lon) to be able to run most of the functions. 'dartR.spatial' is a package that belongs to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.

Authors:Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]

dartR.spatial_1.2.2.tar.gz
dartR.spatial_1.2.2.zip(r-4.7)dartR.spatial_1.2.2.zip(r-4.6)dartR.spatial_1.2.2.zip(r-4.5)
dartR.spatial_1.2.2.tgz(r-4.6-any)dartR.spatial_1.2.2.tgz(r-4.5-any)
dartR.spatial_1.2.2.tar.gz(r-4.7-any)dartR.spatial_1.2.2.tar.gz(r-4.6-any)
dartR.spatial_1.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
dartR.spatial/json (API)

# Install 'dartR.spatial' in R:
install.packages('dartR.spatial', repos = c('https://green-striped-gecko.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/green-striped-gecko/dartr/issues

Pkgdown/docs site:https://green-striped-gecko.github.io

On CRAN:

Conda:

2.30 score 1 scripts 775 downloads 48 mentions 9 exports 120 dependencies

Last updated from:049f116ef5. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK388
source / vignettesOK284
linux-release-x86_64OK331
macos-release-arm64OK210
macos-oldrel-arm64OK229
windows-develOK310
windows-releaseOK351
windows-oldrelOK793
wasm-releaseOK181

Exports:gl.costdistancesgl.genleastcostgl.grm2gl.ibdgl.kosmangl.run.eemsgl.spatial.autoCorrgl2shputils.spautocor

Dependencies:ade4adegenetapebase64encBHbigassertrbigparallelrbigreadrbigsnprbigsparserbigstatsrbigutilsrBiocGenericsbitbootbslibcachemcliclustercodetoolscommonmarkcowplotcpp11crayondartR.basedartR.datadata.tableDEoptimRdigestdismodoParalleldoRNGdplyrfarverfastmapffflockfontawesomeforeachfsgdsfmtgenericsggplot2gluegridExtragtablegtoolshtmltoolshttpuvigraphisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimenabornlmeotelparallellypatchworkpegaspermutepillarpixmappkgconfigplyrpromisespspurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloRcppEigenreshape2RhpcBLASctlrlangrmiorngtoolsrobustbaseroptimRSpectrarunonceS7sassscalessegmentedseqinrshinySNPRelatesnpStatssourcetoolsspStAMPPstringistringrsurvivalterratibbletidyrtidyselecttriebeardurltoolsutf8vctrsveganviridisLitewithrxtable