Package: dartR.spatial 0.78

dartR.spatial: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data

Provides landscape genomic functions to analyse 'SNP' (single nuclear polymorphism) data, such as least cost path analysis and isolation by distance. Therefore each sample needs to have coordinate data attached (lat/lon) to be able to run most of the functions. 'dartR.spatial' is a package that belongs to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.

Authors:Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]

dartR.spatial_0.78.tar.gz
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dartR.spatial.pdf |dartR.spatial.html✨
dartR.spatial/json (API)

# Install 'dartR.spatial' in R:
install.packages('dartR.spatial', repos = c('https://green-striped-gecko.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/green-striped-gecko/dartr/issues

On CRAN:

2.00 score 308 downloads 48 mentions 8 exports 122 dependencies

Last updated 1 years agofrom:fd98fd1007. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 11 2024
R-4.5-winNOTENov 11 2024
R-4.5-linuxNOTENov 11 2024
R-4.4-winOKNov 11 2024
R-4.4-macOKNov 11 2024
R-4.3-winOKSep 12 2024
R-4.3-macOKSep 12 2024

Exports:gl.costdistancesgl.genleastcostgl.grm2gl.ibdgl.kosmangl.spatial.autoCorrgl2shputils.spautocor

Dependencies:ade4adegenetapearsenalbackportsbase64encbootbslibcachemcheckmatecliclustercodetoolscolorspacecommonmarkcpp11crayondartR.basedartR.datadata.tabledigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforeignFormulafsgdsfmtgenericsggplot2gluegridExtragtablehaplo.statshighrHmischtmlTablehtmltoolshtmlwidgetshttpuvigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixMatrixModelsmemoisemgcvmimemultcompmunsellmvtnormnlmennetpatchworkpegaspermutepillarpixmappkgconfigplyrpoisbinompolsplinepromisespurrrquantregR6rappdirsrasterRColorBrewerRcppRcppArmadilloreshape2rlangrmarkdownrmsrpartrstudioapisandwichsassscalessegmentedseqinrshinySNPassocSNPRelatesourcetoolsspSparseMStAMPPstringistringrsurvivalterraTH.datatibbletidyrtidyselecttinytexutf8vctrsveganviridisviridisLitewithrxfunxtableyamlzoo