Package: dartR.spatial 0.78

dartR.spatial: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data

Provides landscape genomic functions to analyse 'SNP' (single nuclear polymorphism) data, such as least cost path analysis and isolation by distance. Therefore each sample needs to have coordinate data attached (lat/lon) to be able to run most of the functions. 'dartR.spatial' is a package that belongs to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.

Authors:Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]

dartR.spatial_0.78.tar.gz
dartR.spatial_0.78.zip(r-4.5)dartR.spatial_0.78.zip(r-4.4)dartR.spatial_0.78.zip(r-4.3)
dartR.spatial_0.78.tgz(r-4.4-any)dartR.spatial_0.78.tgz(r-4.3-any)
dartR.spatial_0.78.tar.gz(r-4.5-noble)dartR.spatial_0.78.tar.gz(r-4.4-noble)
dartR.spatial_0.78.tgz(r-4.4-emscripten)dartR.spatial_0.78.tgz(r-4.3-emscripten)
dartR.spatial.pdf |dartR.spatial.html✨
dartR.spatial/json (API)

Peer review:

Bug tracker:https://github.com/green-striped-gecko/dartr/issues

On CRAN:

8 exports 4.68 score 89 dependencies 48 mentions 331 downloads

Last updated 10 months agofrom:fd98fd1007. Checks:OK: 5 NOTE: 2. Indexed: yes.

Exports:gl.costdistancesgl.genleastcostgl.grm2gl.ibdgl.kosmangl.spatial.autoCorrgl2shputils.spautocor

Dependencies:ade4adegenetapebase64encbootbslibcachemcliclustercodetoolscolorspacecommonmarkcpp11crayondartR.basedartR.datadata.tabledigestdoParalleldplyrfansifarverfastmapfontawesomeforeachfsgdsfmtgenericsggplot2gluegridExtragtablehtmltoolshttpuvigraphisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepatchworkpegaspermutepillarpixmappkgconfigplyrpromisespurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloreshape2rlangsassscalessegmentedseqinrshinySNPRelatesourcetoolsspStAMPPstringistringrterratibbletidyrtidyselectutf8vctrsveganviridisLitewithrxtable