Package: dartR.spatial 1.2.2

dartR.spatial: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data

Provides landscape genomic functions to analyse 'SNP' (single nuclear polymorphism) data, such as least cost path analysis and isolation by distance. Therefore each sample needs to have coordinate data attached (lat/lon) to be able to run most of the functions. 'dartR.spatial' is a package that belongs to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.

Authors:Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]

dartR.spatial_1.2.2.tar.gz
dartR.spatial_1.2.2.zip(r-4.7)dartR.spatial_1.2.2.zip(r-4.6)dartR.spatial_1.2.2.zip(r-4.5)
dartR.spatial_1.2.2.tgz(r-4.6-any)dartR.spatial_1.2.2.tgz(r-4.5-any)
dartR.spatial_1.2.2.tar.gz(r-4.7-any)dartR.spatial_1.2.2.tar.gz(r-4.6-any)
dartR.spatial_1.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dartR.spatial/json (API)

# Install 'dartR.spatial' in R:
install.packages('dartR.spatial', repos = c('https://green-striped-gecko.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/green-striped-gecko/dartr/issues

Pkgdown/docs site:https://green-striped-gecko.github.io

On CRAN:

Conda:

2.30 score 1 scripts 777 downloads 48 mentions 9 exports 120 dependencies

Last updated from:049f116ef5. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK346
source / vignettesOK301
linux-release-x86_64OK340
macos-release-arm64OK165
macos-oldrel-arm64OK223
windows-develOK331
windows-releaseOK312
windows-oldrelOK306
wasm-releaseOK181

Exports:gl.costdistancesgl.genleastcostgl.grm2gl.ibdgl.kosmangl.run.eemsgl.spatial.autoCorrgl2shputils.spautocor

Dependencies:ade4adegenetapebase64encBHbigassertrbigparallelrbigreadrbigsnprbigsparserbigstatsrbigutilsrBiocGenericsbitbootbslibcachemcliclustercodetoolscommonmarkcowplotcpp11crayondartR.basedartR.datadata.tableDEoptimRdigestdismodoParalleldoRNGdplyrfarverfastmapffflockfontawesomeforeachfsgdsfmtgenericsggplot2gluegridExtragtablegtoolshtmltoolshttpuvigraphisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimenabornlmeotelparallellypatchworkpegaspermutepillarpixmappkgconfigplyrpromisespspurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloRcppEigenreshape2RhpcBLASctlrlangrmiorngtoolsrobustbaseroptimRSpectrarunonceS7sassscalessegmentedseqinrshinySNPRelatesnpStatssourcetoolsspStAMPPstringistringrsurvivalterratibbletidyrtidyselecttriebeardurltoolsutf8vctrsveganviridisLitewithrxtable