Package: dartR.spatial 1.2.2

dartR.spatial: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data

Provides landscape genomic functions to analyse 'SNP' (single nuclear polymorphism) data, such as least cost path analysis and isolation by distance. Therefore each sample needs to have coordinate data attached (lat/lon) to be able to run most of the functions. 'dartR.spatial' is a package that belongs to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.

Authors:Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]

dartR.spatial_1.2.2.tar.gz
dartR.spatial_1.2.2.zip(r-4.7-any)dartR.spatial_1.2.2.zip(r-4.6-any)dartR.spatial_1.2.2.zip(r-4.5-any)
dartR.spatial_1.2.2.tgz(r-4.6-any)dartR.spatial_1.2.2.tgz(r-4.5-any)
dartR.spatial_1.2.2.tar.gz(r-4.7-any)dartR.spatial_1.2.2.tar.gz(r-4.6-any)
dartR.spatial_1.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
dartR.spatial/json (API)

# Install 'dartR.spatial' in R:
install.packages('dartR.spatial', repos = c('https://green-striped-gecko.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/green-striped-gecko/dartr/issues

Pkgdown/docs site:https://green-striped-gecko.github.io

On CRAN:

Conda:

2.00 score 1 scripts 512 downloads 48 mentions 9 exports 120 dependencies

Last updated from:049f116ef5. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK328
source / vignettesOK589
linux-releaseOK308
macos-releaseOK258
macos-oldrelOK233
windows-develOK327
windows-releaseOK329
windows-oldrelOK281
wasm-releaseOK184

Exports:gl.costdistancesgl.genleastcostgl.grm2gl.ibdgl.kosmangl.run.eemsgl.spatial.autoCorrgl2shputils.spautocor

Dependencies:ade4adegenetapebase64encBHbigassertrbigparallelrbigreadrbigsnprbigsparserbigstatsrbigutilsrBiocGenericsbitbootbslibcachemcliclustercodetoolscommonmarkcowplotcpp11crayondartR.basedartR.datadata.tableDEoptimRdigestdismodoParalleldoRNGdplyrfarverfastmapffflockfontawesomeforeachfsgdsfmtgenericsggplot2gluegridExtragtablegtoolshtmltoolshttpuvigraphisobanditeratorsjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimenabornlmeotelparallellypatchworkpegaspermutepillarpixmappkgconfigplyrpromisespspurrrR6rappdirsrasterRColorBrewerRcppRcppArmadilloRcppEigenreshape2RhpcBLASctlrlangrmiorngtoolsrobustbaseroptimRSpectrarunonceS7sassscalessegmentedseqinrshinySNPRelatesnpStatssourcetoolsspStAMPPstringistringrsurvivalterratibbletidyrtidyselecttriebeardurltoolsutf8vctrsveganviridisLitewithrxtable