Package: dartR.spatial 0.78

dartR.spatial: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data

Provides landscape genomic functions to analyse 'SNP' (single nuclear polymorphism) data, such as least cost path analysis and isolation by distance. Therefore each sample needs to have coordinate data attached (lat/lon) to be able to run most of the functions. 'dartR.spatial' is a package that belongs to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.

Authors:Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]

dartR.spatial_0.78.tar.gz
dartR.spatial_0.78.zip(r-4.5)dartR.spatial_0.78.zip(r-4.4)
dartR.spatial_0.78.tgz(r-4.4-any)
dartR.spatial_0.78.tar.gz(r-4.5-noble)dartR.spatial_0.78.tar.gz(r-4.4-noble)
dartR.spatial_0.78.tgz(r-4.4-emscripten)
dartR.spatial.pdf |dartR.spatial.html✨
dartR.spatial/json (API)

# Install 'dartR.spatial' in R:
install.packages('dartR.spatial', repos = c('https://green-striped-gecko.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/green-striped-gecko/dartr/issues

Pkgdown site:https://green-striped-gecko.github.io

On CRAN:

2.00 score 264 downloads 48 mentions 8 exports 122 dependencies

Last updated 1 years agofrom:fd98fd1007. Checks:3 OK, 2 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 10 2025
R-4.5-winNOTEJan 10 2025
R-4.5-linuxNOTEJan 10 2025
R-4.4-winOKJan 10 2025
R-4.4-macOKJan 10 2025

Exports:gl.costdistancesgl.genleastcostgl.grm2gl.ibdgl.kosmangl.spatial.autoCorrgl2shputils.spautocor

Dependencies:ade4adegenetapearsenalbackportsbase64encbootbslibcachemcheckmatecliclustercodetoolscolorspacecommonmarkcpp11crayondartR.basedartR.datadata.tabledigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforeignFormulafsgdsfmtgenericsggplot2gluegridExtragtablehaplo.statshighrHmischtmlTablehtmltoolshtmlwidgetshttpuvigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixMatrixModelsmemoisemgcvmimemultcompmunsellmvtnormnlmennetpatchworkpegaspermutepillarpixmappkgconfigplyrpoisbinompolsplinepromisespurrrquantregR6rappdirsrasterRColorBrewerRcppRcppArmadilloreshape2rlangrmarkdownrmsrpartrstudioapisandwichsassscalessegmentedseqinrshinySNPassocSNPRelatesourcetoolsspSparseMStAMPPstringistringrsurvivalterraTH.datatibbletidyrtidyselecttinytexutf8vctrsveganviridisviridisLitewithrxfunxtableyamlzoo