Package: dartR.spatial 0.78

dartR.spatial: Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data

Provides landscape genomic functions to analyse 'SNP' (single nuclear polymorphism) data, such as least cost path analysis and isolation by distance. Therefore each sample needs to have coordinate data attached (lat/lon) to be able to run most of the functions. 'dartR.spatial' is a package that belongs to the 'dartRverse' suit of packages and depends on 'dartR.base' and 'dartR.data'.

Authors:Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [ctb], Oliver Berry [ctb]

dartR.spatial_0.78.tar.gz
dartR.spatial_0.78.zip(r-4.5)dartR.spatial_0.78.zip(r-4.4)
dartR.spatial_0.78.tgz(r-4.5-any)dartR.spatial_0.78.tgz(r-4.4-any)
dartR.spatial_0.78.tar.gz(r-4.5-noble)dartR.spatial_0.78.tar.gz(r-4.4-noble)
dartR.spatial_0.78.tgz(r-4.4-emscripten)
dartR.spatial.pdf |dartR.spatial.html✨
dartR.spatial/json (API)

# Install 'dartR.spatial' in R:
install.packages('dartR.spatial', repos = c('https://green-striped-gecko.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/green-striped-gecko/dartr/issues

Pkgdown site:https://green-striped-gecko.github.io

On CRAN:

Conda:

2.00 score 449 downloads 48 mentions 8 exports 125 dependencies

Last updated 1 years agofrom:fd98fd1007. Checks:4 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 11 2025
R-4.5-winNOTEMar 11 2025
R-4.5-macNOTEMar 11 2025
R-4.5-linuxNOTEMar 11 2025
R-4.4-winOKMar 11 2025
R-4.4-macOKMar 11 2025
R-4.4-linuxOKMar 11 2025

Exports:gl.costdistancesgl.genleastcostgl.grm2gl.ibdgl.kosmangl.spatial.autoCorrgl2shputils.spautocor

Dependencies:ade4adegenetapearsenalbackportsbase64encBiocGenericsbootbslibcachemcheckmatecliclustercodetoolscolorspacecommonmarkcpp11crayondartR.basedartR.datadata.tabledigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforeignFormulafsgdsfmtgenericsggplot2gluegridExtragtablehaplo.statshighrHmischtmlTablehtmltoolshtmlwidgetshttpuvigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixMatrixModelsmemoisemgcvmimemultcompmunsellmvtnormnlmennetpatchworkpegaspermutepillarpixmappkgconfigplyrpoisbinompolsplinepromisespurrrquantregR6rappdirsrasterRColorBrewerRcppRcppArmadilloreshape2rlangrmarkdownrmsrpartrstudioapisandwichsassscalessegmentedseqinrshinySNPassocSNPRelatesnpStatssourcetoolsspSparseMStAMPPstringistringrsurvivalterraTH.datatibbletidyrtidyselecttinytexutf8vctrsveganviridisviridisLitewithrxfunxtableyamlzlibbioczoo